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    LOC4336468 ABC transporter G family member 11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336468, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336468
    Gene description
    ABC transporter G family member 11
    Locus tag
    OSNPB_040528300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 17.7), flower buds (RPKM 11.3) and 5 other tissues See more
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    Genomic context

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    See LOC4336468 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (26899168..26904700)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (26395875..26401495)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene UPF0426 protein At1g28150, chloroplastic Neighboring gene uncharacterized LOC136351133 Neighboring gene uncharacterized LOC4336469 Neighboring gene uncharacterized LOC136356230

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ABC transporter G family member 11
    Names
    Os04g0528300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      26899168..26904700
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781496.3 → XP_015636982.1  ABC transporter G family member 11 isoform X1

      UniProtKB/TrEMBL
      A2XVR4, Q01HN4, Q7XUM2
      Conserved Domains (3) summary
      cd03213
      Location:64 → 292
      ABCG_EPDR; Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily
      TIGR00955
      Location:83 → 706
      3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein
      pfam01061
      Location:442 → 643
      ABC2_membrane; ABC-2 type transporter

    2. XM_015781497.3 → XP_015636983.1  ABC transporter G family member 11 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WCQ0, A2XVR4, Q01HN4, Q0JBJ8, Q7XUM2
      Conserved Domains (1) summary
      TIGR00955
      Location:83 → 668
      3a01204; The Eye Pigment Precursor Transporter (EPP) Family protein
    Nucleotide Protein
    Heading Accession and Version

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