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    LOC4324672 uncharacterized LOC4324672 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324672, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324672
    Gene description
    uncharacterized LOC4324672
    Locus tag
    OSNPB_010558200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1064G04.5
    Expression
    Ubiquitous expression in roots after flowering (RPKM 15.9), leaves after flowering (RPKM 15.2) and 6 other tissues See more
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    Genomic context

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    See LOC4324672 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (21689092..21694881)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (21118886..21124713)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354852 Neighboring gene probable glutathione S-transferase GSTU6 Neighboring gene uncharacterized LOC4324673 Neighboring gene uncharacterized protein At1g51745

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutamate dehydrogenase (NADP+) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glutamate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324672
    Names
    B1144D11.27
    NADP-specific glutamate dehydrogenase
    Os01g0558200
    putative NADP-specific glutamate dehydrogenase (NADP-GDH) (NADP-dependent glutamate dehydrogenase)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      21689092..21694881
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764008.3 → XP_015619494.1  uncharacterized protein LOC4324672 isoform X1

      UniProtKB/TrEMBL
      A0A0P0V4B0
      Conserved Domains (3) summary
      PRK09414
      Location:199 → 609
      PRK09414; glutamate dehydrogenase; Provisional
      pfam02812
      Location:245 → 373
      ELFV_dehydrog_N; Glu/Leu/Phe/Val dehydrogenase, dimerization domain
      cl21454
      Location:383 → 609
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    2. XM_015764015.3 → XP_015619501.1  uncharacterized protein LOC4324672 isoform X2

      UniProtKB/TrEMBL
      A0A0P0V4B0, Q0JLY1, Q5JKR7
      Conserved Domains (1) summary
      PRK09414
      Location:199 → 640
      PRK09414; NADP-specific glutamate dehydrogenase

    RNA

    1. XR_001542021.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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