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    LOC4324344 putative lipid-transfer protein DIR1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324344, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4324344
    Gene description
    putative lipid-transfer protein DIR1
    Locus tag
    OSNPB_010914300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4324344 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39839220..39840444)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4324341 Neighboring gene putative lipid-transfer protein DIR1 Neighboring gene pentatricopeptide repeat-containing protein At3g29230 Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein 9 Neighboring gene signal peptide peptidase-like 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables fatty acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in systemic acquired resistance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative lipid-transfer protein DIR1
    Names
    Os01g0914300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      39839220..39840444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782835.2 → XP_015638321.1  putative lipid-transfer protein DIR1

      UniProtKB/TrEMBL
      A0A0P0VC14, A0A8J8YF35, B9EVJ3, Q0JGN6
      Conserved Domains (1) summary
      cd04660
      Location:29 → 102
      nsLTP_like; Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium ...
    Nucleotide Protein
    Heading Accession and Version

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