LOC4351224 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4351224
Gene description: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like
Locus tag: OSNPB_110707000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: RA; rca; RCAA1; RCAA2; OsrcaA1; OsJ_033539
Expression: Broad expression in roots after flowering (RPKM 349.7), leaves after flowering (RPKM 203.5) and 4 other tissues See more
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Genomic context

Location:: chromosome: 11

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	11	NC_089045.1 (30986845..30990048, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	11	NC_029266.1 (28932976..28936094, complement)

Chromosome 11 - NC_089045.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Overexpression of both Rubisco and Rubisco activase rescues rice photosynthesis and biomass under heat stress.
Title: Overexpression of both Rubisco and Rubisco activase rescues rice photosynthesis and biomass under heat stress.
A comparative biochemical characterization of rice (Oryza sativa) and Agave tequilana Rca isoforms demonstrated that the CAM Rca isoforms are approximately10 degrees C more thermostable than the C3 isoforms.
Title: In Vitro Characterization of Thermostable CAM Rubisco Activase Reveals a Rubisco Interacting Surface Loop.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables ATP hydrolysis activity	IEA Inferred from Electronic Annotation more info	PubMed
enables ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast stroma	IEA Inferred from Electronic Annotation more info	PubMed
located_in thylakoid	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic

Names: LOC_Os11g47970; ribulose-1,5-bisphosphate carboxylase/oxygenase activase; ruBisCO activase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.