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    LOC4344032 uncharacterized LOC4344032 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344032, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344032
    Gene description
    uncharacterized LOC4344032
    Locus tag
    OSNPB_070636400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1136_D11.108
    Expression
    Ubiquitous expression in flowers (RPKM 11.1), flower buds (RPKM 11.0) and 6 other tissues See more
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    Genomic context

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    See LOC4344032 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (26659425..26661932)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (26432703..26435232)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable transcription factor At5g28040 Neighboring gene uncharacterized LOC4344031 Neighboring gene uncharacterized LOC136357309 Neighboring gene dirigent protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344032
    Names
    Os07g0636400
    RNaseP-associated protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      26659425..26661932
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790654.3 → XP_015646140.1  uncharacterized protein LOC4344032 isoform X2

      Conserved Domains (1) summary
      cl00600
      Location:105 → 159
      Ribosomal_L7Ae; Ribosomal protein L7Ae/L30e/S12e/Gadd45 family

    2. XM_015790653.3 → XP_015646139.1  uncharacterized protein LOC4344032 isoform X1

      UniProtKB/TrEMBL
      B8B557, B9FUF6, Q0D4B5, Q7XIX6
      Conserved Domains (1) summary
      PRK10263
      Location:22 → 105
      PRK10263; DNA translocase FtsK; Provisional
    Nucleotide Protein
    Heading Accession and Version

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