LOC4332134 cytochrome P450 90B2-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4332134
Gene description: cytochrome P450 90B2-like
Locus tag: OSNPB_030227700
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: DWARF4; CYP90B2; OsDWARF4; OsCYP90B2; OJ1626B05.9
Expression: Broad expression in roots before flowering (RPKM 12.2), roots after flowering (RPKM 10.5) and 4 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (6785718..6792785)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (6737488..6744509)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables heme binding	IEA Inferred from Electronic Annotation more info	PubMed
enables iron ion binding	IEA Inferred from Electronic Annotation more info	PubMed
enables monooxygenase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in sterol metabolic process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: steroid (22S)-hydroxylase

Names: (22S)-22-hydroxycampesterol synthase; 6-deoxycathasterone synthase; Cytochrome P450 90B2; LOC_Os03g12660; Os03g0227700; Protein DWARF4 homolog; Steroid 22-alpha-hydroxylase; cytochrome P450 90B1

NP_001404356.1

EC 1.14.14.178

XP_066164225.1

EC 1.14.14.178

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.