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    LOC4351684 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351684, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4351684
    Gene description
    2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial
    Locus tag
    OSNPB_120183100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 105.5), leaves after flowering (RPKM 81.2) and 5 other tissues See more
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    Genomic context

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    See LOC4351684 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (4238579..4242937)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (4209120..4213181)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351683 Neighboring gene uncharacterized LOC9267418 Neighboring gene 3'(2'),5'-bisphosphate nucleotidase Neighboring gene 3'(2'),5'-bisphosphate nucleotidase-like Neighboring gene ricin B-like lectin R40C1 Neighboring gene uncharacterized LOC136354647

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Leaf senescence in rice plants: cloning and characterization of senescence up-regulated genes. Lee RH, et al. J Exp Bot, 2001 May. PMID 11432928
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in branched-chain amino acid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial
    Names
    Os12g0183100
    branched chain alpha-keto acid dehydrogenase E1-alpha subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      4238579..4242937
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764471.3 → XP_015619957.1  2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial isoform X1

      UniProtKB/TrEMBL
      B8BNH6, Q2QWT6
      Conserved Domains (1) summary
      cd02000
      Location:148 → 440
      TPP_E1_PDC_ADC_BCADC; Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain ...

    2. XM_015764473.2 → XP_015619959.1  2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial isoform X2

      UniProtKB/TrEMBL
      B8BNH6, Q0IPM2, Q2QWT8
      Conserved Domains (1) summary
      cd02000
      Location:147 → 439
      TPP_E1_PDC_ADC_BCADC; Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain ...

    3. XM_015764472.2 → XP_015619958.1  2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial isoform X2

      UniProtKB/TrEMBL
      B8BNH6, Q0IPM2, Q2QWT8
      Conserved Domains (1) summary
      cd02000
      Location:147 → 439
      TPP_E1_PDC_ADC_BCADC; Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain ...
    Nucleotide Protein
    Heading Accession and Version

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