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    LOC4344369 probable pectinesterase/pectinesterase inhibitor 21 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344369, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344369
    Gene description
    probable pectinesterase/pectinesterase inhibitor 21
    Locus tag
    OSNPB_070691100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 66.2) and flowers (RPKM 3.8) See more
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    Genomic context

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    See LOC4344369 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29622071..29624528)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29387436..29390069)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C 33 Neighboring gene uncharacterized LOC107281799 Neighboring gene uncharacterized LOC107277841 Neighboring gene COBRA-like protein 7 Neighboring gene uncharacterized LOC4344370 Neighboring gene senescence associated gene 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pectinesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pectinesterase inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall modification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable pectinesterase/pectinesterase inhibitor 21
    Names
    Os07g0691100
    P0597G07.130
    putative pectin methylesterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29622071..29624528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790197.3 → XP_015645683.1  probable pectinesterase/pectinesterase inhibitor 21

      UniProtKB/TrEMBL
      A0A0P0XAV6, A3BNN5, Q7F0H7
      Conserved Domains (1) summary
      PLN02217
      Location:27 → 557
      PLN02217; probable pectinesterase/pectinesterase inhibitor
    Nucleotide Protein
    Heading Accession and Version

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