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    LOC4328046 mannosyltransferase APTG1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328046, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328046
    Gene description
    mannosyltransferase APTG1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4328046 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (629601..634073)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (623037..630589)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase B Neighboring gene uncharacterized LOC107280108 Neighboring gene wall-associated receptor kinase 5 Neighboring gene large ribosomal subunit protein eL37z Neighboring gene small nucleolar RNA Z199

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-1,2-mannosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in GPI anchor biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mannosyltransferase APTG1
    Names
    GPI mannosyltransferase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      629601..634073
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066307152.1 → XP_066163249.1  mannosyltransferase APTG1 isoform X2

    2. XM_015771661.3 → XP_015627147.1  mannosyltransferase APTG1 isoform X1

      Conserved Domains (1) summary
      cl21590
      Location:1 → 477
      PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
    Nucleotide Protein
    Heading Accession and Version

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