LOC4334685 squamosa promoter-binding-like protein 6 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4334685
Gene description: squamosa promoter-binding-like protein 6
Locus tag: OSNPB_030833300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: SPL6; OsJ_13251
Expression: Ubiquitous expression in flowers (RPKM 29.1), roots before flowering (RPKM 28.6) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	3	NC_089037.1 (35980865..35988536, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (35008219..35015724, complement)

Chromosome 3 - NC_089037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

SPL6 represses the transcriptional activation of the endoplasmic reticulum stress sensor IRE1 in control of endoplasmic reticulum stress signalling outputs that hinge on a balance between adaptive and death signals for determining cell fates during endoplasmic reticulum stress.SPL6 is highly expressed in the apical portion of inflorescence during panicle development.
Title: SPL6 represses signalling outputs of ER stress in control of panicle cell death in rice.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: squamosa promoter-binding-like protein 6

Names: LOC_Os03g61760; OSJNBa0078D06.37; OSJNBa0096I06.31

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001418978.1 → NP_001405907.1 squamosa promoter-binding-like protein 6

Status: VALIDATED

Source sequence(s)

AK065741, AK069847, AK121030, CB676196

UniProtKB/Swiss-Prot

B9F7F8, Q75LH6, Q7Y147

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089037.1 Reference ASM3414082v1 Primary Assembly

Range

35980865..35988536 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015776026.3 → XP_015631512.1 squamosa promoter-binding-like protein 6 isoform X1

UniProtKB/TrEMBL

A0A0P0W540

Conserved Domains (4) summary

cd00204
Location:736 → 836

ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...

pfam03110
Location:152 → 226

SBP; SBP domain

pfam13857
Location:764 → 825

Ank_5; Ankyrin repeats (many copies)

sd00045
Location:774 → 815

ANK; ANK repeat [structural motif]