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    LOC4331856 UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331856, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4331856
    Gene description
    UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
    Locus tag
    OSNPB_030184300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GUX3
    Expression
    Biased expression in flowers (RPKM 62.7), flower buds (RPKM 33.3) and 2 other tissues See more
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    Genomic context

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    See LOC4331856 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (4439475..4444755)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (4428776..4434156)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331855 Neighboring gene uncharacterized LOC9267042 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At1g67720 Neighboring gene B3 domain-containing protein Os03g0184500-like Neighboring gene putative dihydroflavonol 4-reductase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Biochemical Characterization of Rice Xylan Biosynthetic Enzymes in Determining Xylan Chain Elongation and Substitutions. Zhong R, et al. Plant Cell Physiol, 2024 Jun 27. PMID 38501734
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in xylan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    UDP-glucuronate:xylan alpha-glucuronosyltransferase 2
    Names
    Os03g0184300
    xylan glucuronyltransferase 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      4439475..4444755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777742.3 → XP_015633228.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VU02, Q10QT2, Q94HG3
      Conserved Domains (1) summary
      cd02537
      Location:363 → 607
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen

    2. XM_015777743.3 → XP_015633229.1  UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VU02, A0A5S6R736, Q0DUI6, Q10QT1, Q10QT2, Q94HG3
      Conserved Domains (2) summary
      cd02537
      Location:210 → 454
      GT8_Glycogenin; Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen
      COG1442
      Location:285 → 421
      RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
    Nucleotide Protein
    Heading Accession and Version

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