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    LOC4334849 protein EXPORTIN 1A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334849, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4334849
    Gene description
    protein EXPORTIN 1A
    Locus tag
    OSNPB_030858100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 31.0), flower buds (RPKM 29.3) and 6 other tissues See more
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    Genomic context

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    See LOC4334849 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (37191632..37202132, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36212808..36223127, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable cytokinin riboside 5'-monophosphate phosphoribohydrolase LOGL5 Neighboring gene small nucleolar RNA Z247 Neighboring gene uncharacterized LOC4334850 Neighboring gene uncharacterized LOC4334851

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables nuclear export signal receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small GTPase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal large subunit export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal small subunit export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein EXPORTIN 1A
    Names
    Os03g0858100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      37191632..37202132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776601.2 → XP_015632087.1  protein EXPORTIN 1A isoform X1

      UniProtKB/TrEMBL
      A3AHY0, Q0DLL5, Q84M87
      Conserved Domains (1) summary
      COG5101
      Location:3 → 1039
      CRM1; Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

    2. XM_066308680.1 → XP_066164777.1  protein EXPORTIN 1A isoform X2

      UniProtKB/TrEMBL
      A3AHY0
    Nucleotide Protein
    Heading Accession and Version

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