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    LOC4325002 ubinuclein-1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325002, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325002
    Gene description
    ubinuclein-1
    Locus tag
    OSNPB_010883200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 27.5), leaves after flowering (RPKM 24.3) and 6 other tissues See more
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    Genomic context

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    See LOC4325002 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38956172..38962739)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38326122..38332607)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene amino acid permease 4 Neighboring gene probable receptor-like protein kinase At1g11050 Neighboring gene MADS-box transcription factor 2-like Neighboring gene uncharacterized LOC136354780 Neighboring gene gibberellin 20 oxidase 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chromatin organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubinuclein-1
    Names
    B1065E10.32
    Os01g0883200
    wound-responsive protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38956172..38962739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766634.3 → XP_015622120.1  ubinuclein-1 isoform X1

      UniProtKB/TrEMBL
      B8A7B3
      Conserved Domains (1) summary
      pfam08729
      Location:152 → 186
      HUN; HPC2 and ubinuclein domain

    2. XM_015766635.3 → XP_015622121.1  ubinuclein-1 isoform X2

      UniProtKB/TrEMBL
      B8A7B3
      Conserved Domains (1) summary
      pfam08729
      Location:152 → 186
      HUN; HPC2 and ubinuclein domain
    Nucleotide Protein
    Heading Accession and Version

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