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    LOC4325108 sister chromatid cohesion 1 protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325108, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4325108
    Gene description
    sister chromatid cohesion 1 protein 4
    Locus tag
    OSNPB_010897800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0506A10.9
    Expression
    Ubiquitous expression in roots after flowering (RPKM 58.7), leaves before flowering (RPKM 54.7) and 6 other tissues See more
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    Genomic context

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    See LOC4325108 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39656860..39666588, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39025297..39035050, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene beta-glucosidase 4-like Neighboring gene formin-like protein 1 Neighboring gene uncharacterized LOC107277813 Neighboring gene protein SEMI-ROLLED LEAF 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables chromatin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in replication-born double-strand break repair via sister chromatid exchange IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sister chromatid cohesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cohesin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sister chromatid cohesion 1 protein 4
    Names
    Os01g0897800
    P0674H09.26
    putative RAD21-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39656860..39666588 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760959.3 → XP_015616445.1  sister chromatid cohesion 1 protein 4

      UniProtKB/TrEMBL
      A0A0P0VBI8, B9EVC9, Q0JGX3, Q5N861, Q6WG80
      Conserved Domains (2) summary
      pfam04824
      Location:1006 → 1050
      Rad21_Rec8; Conserved region of Rad21 / Rec8 like protein
      pfam04825
      Location:1 → 104
      Rad21_Rec8_N; N-terminus of Rad21 / Rec8 like protein
    Nucleotide Protein
    Heading Accession and Version

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