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    LOC4334833 outer envelope pore protein 24, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334833, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4334833
    Gene description
    outer envelope pore protein 24, chloroplastic-like
    Locus tag
    OSNPB_030855600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OEP24; OsJ_13425
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 44.6), flower buds (RPKM 34.2) and 6 other tissues See more
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    Genomic context

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    See LOC4334833 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (37053882..37058705)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36074895..36079767)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RRS1B Neighboring gene uncharacterized LOC4334832 Neighboring gene replication protein A 70 kDa DNA-binding subunit B-like Neighboring gene S-norcoclaurine synthase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables voltage-gated monoatomic cation channel activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of monoatomic ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    outer envelope pore protein 24, chloroplastic
    Names
    Chloroplastic outer envelope pore protein of 24 kDa
    LOC_Os03g63860

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402328.1 → NP_001389257.1  outer envelope pore protein 24, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK061467, AU173124, CI662916
      UniProtKB/Swiss-Prot
      A0A0P0W5M1, B8ANR3, Q75IQ4

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      37053882..37058705
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75IQ4.1 GenPept UniProtKB/Swiss-Prot:Q75IQ4

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