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    LOC4336661 protein S-acyltransferase 10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336661, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4336661
    Gene description
    protein S-acyltransferase 10
    Locus tag
    OSNPB_040562000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 25.7), flower buds (RPKM 21.6) and 6 other tissues See more
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    Genomic context

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    See LOC4336661 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (28636397..28641849)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (28131102..28136543)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene GDSL esterase/lipase At4g16230 Neighboring gene L-ascorbate oxidase homolog Neighboring gene lysine histidine transporter-like 8 Neighboring gene uncharacterized LOC107280655

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-cysteine S-palmitoyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-L-cysteine S-palmitoylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein targeting to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein S-acyltransferase 10
    Names
    Os04g0562000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      28636397..28641849
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781271.3 → XP_015636757.1  protein S-acyltransferase 10 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WDJ3, B8ASY7, Q01JA7, Q0JB17
      Conserved Domains (1) summary
      pfam01529
      Location:167 → 284
      DHHC; DHHC palmitoyltransferase

    2. XM_066309563.1 → XP_066165660.1  protein S-acyltransferase 10 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WDM2, Q7XSQ0

    3. XM_015781270.3 → XP_015636756.1  protein S-acyltransferase 10 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WDJ3, B8ASY7, Q01JA7, Q0JB17
      Conserved Domains (1) summary
      pfam01529
      Location:167 → 284
      DHHC; DHHC palmitoyltransferase

    4. XM_015781272.3 → XP_015636758.1  protein S-acyltransferase 10 isoform X1

      UniProtKB/TrEMBL
      A0A0P0WDJ3, B8ASY7, Q01JA7, Q0JB17
      Conserved Domains (1) summary
      pfam01529
      Location:167 → 284
      DHHC; DHHC palmitoyltransferase

    5. XM_015781273.3 → XP_015636759.1  protein S-acyltransferase 10 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WDM2, Q01JA7, Q7XSQ0
      Conserved Domains (1) summary
      pfam01529
      Location:159 → 276
      DHHC; DHHC palmitoyltransferase

    6. XM_015781274.3 → XP_015636760.1  protein S-acyltransferase 10 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WDM2, Q01JA7, Q7XSQ0
      Conserved Domains (1) summary
      pfam01529
      Location:159 → 276
      DHHC; DHHC palmitoyltransferase
    Nucleotide Protein
    Heading Accession and Version

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