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    LOC4340767 rhamnogalacturonan I rhamnosyltransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340767, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340767
    Gene description
    rhamnogalacturonan I rhamnosyltransferase 1
    Locus tag
    OSNPB_060284200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flowers (RPKM 44.0), flower buds (RPKM 12.7) and 2 other tissues See more
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    Genomic context

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    See LOC4340767 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (10259806..10264197, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (10082779..10087219, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol 4-kinase gamma 5 Neighboring gene uncharacterized LOC136356974 Neighboring gene dof zinc finger protein 4-like Neighboring gene protein MICROTUBULE BINDING PROTEIN 2C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rhamnogalacturonan I rhamnosyltransferase 1
    Names
    O-fucosyltransferase 34
    Os06g0284200
    P0491D10.16
    putative auxin-independent growth promoter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      10259806..10264197 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785758.3 → XP_015641244.1  rhamnogalacturonan I rhamnosyltransferase 1

      UniProtKB/TrEMBL
      A2YBS8, A3BAQ4, Q0DCW1, Q5VNG4
      Conserved Domains (1) summary
      cd11299
      Location:110 → 435
      O-FucT_plant; GDP-fucose protein O-fucosyltransferase, plant specific subfamily
    Nucleotide Protein
    Heading Accession and Version

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