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    LOC4329692 glutathione S-transferase zeta class [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329692, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4329692
    Gene description
    glutathione S-transferase zeta class
    Locus tag
    OSNPB_020564000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    gst2; GSTZ3; OJ1712_E04.21
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 33.7), roots after flowering (RPKM 32.2) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21891032..21893912, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21410718..21413693, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937887 Neighboring gene uncharacterized LOC4329691 Neighboring gene PHD finger protein ALFIN-LIKE 7-like Neighboring gene NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glutathione transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables maleylacetoacetate isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-phenylalanine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glutathione metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glutathione S-transferase zeta class
    Names
    Os02g0564000
    P0020C11.10
    glutathione S-transferase 2
    putative glutathione s-transferase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424276.1 → NP_001411205.1  glutathione S-transferase zeta class

      Status: VALIDATED

      Source sequence(s)
      AK073086
      UniProtKB/TrEMBL
      A0A0P0VKH5, B9F0L5, Q6Z7F5

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      21891032..21893912 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769678.3 → XP_015625164.1  glutathione S-transferase zeta class isoform X1

      UniProtKB/TrEMBL
      B8ADZ2, B9F0L5, Q0GKV1
      Conserved Domains (1) summary
      TIGR01262
      Location:16 → 222
      maiA; maleylacetoacetate isomerase
    Nucleotide Protein
    Heading Accession and Version

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