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    LOC4342750 protein SLOW WALKER 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342750, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4342750
    Gene description
    protein SLOW WALKER 1
    Locus tag
    OSNPB_070224900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4342750 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (7029514..7031353)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (6949927..6951984)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene calmodulin-1 Neighboring gene large ribosomal subunit protein eL24 Neighboring gene uncharacterized LOC4342752 Neighboring gene NAC domain-containing protein 67-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein SLOW WALKER 1
    Names
    OSJNBa0066H10.103
    Os07g0224900
    P0668C05.122
    WD domain, G-beta repeat domain-containing protein
    transducin /WD-40 repeat protein family-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      7029514..7031353
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789230.3 → XP_015644716.1  protein SLOW WALKER 1

      UniProtKB/TrEMBL
      A2YJJ8, Q69PM9, Q8LH68
      Conserved Domains (3) summary
      sd00039
      Location:51 → 88
      7WD40; WD40 repeat [structural motif]
      pfam09384
      Location:384 → 527
      UTP15_C; UTP15 C terminal
      cl29593
      Location:92 → 336
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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