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    LOC9272548 protein ALWAYS EARLY 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272548, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9272548
    Gene description
    protein ALWAYS EARLY 3
    Locus tag
    OSNPB_030639200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 13.8), flowers (RPKM 12.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (25381402..25397665)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (24518136..24534360)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene putative F-box/LRR-repeat protein 9 Neighboring gene uncharacterized LOC107277039 Neighboring gene transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like Neighboring gene uncharacterized LOC4333535

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of transcription repressor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ALWAYS EARLY 3
    Names
    Os03g0639233
    protein ALWAYS EARLY 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      25381402..25397665
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066308994.1 → XP_066165091.1  protein ALWAYS EARLY 3 isoform X3

      UniProtKB/TrEMBL
      Q10G93

    2. XM_015776442.3 → XP_015631928.1  protein ALWAYS EARLY 3 isoform X4

      UniProtKB/TrEMBL
      Q10G93
      Conserved Domains (2) summary
      pfam00249
      Location:47 → 89
      Myb_DNA-binding; Myb-like DNA-binding domain
      pfam06584
      Location:627 → 727
      DIRP

    3. XM_066308992.1 → XP_066165089.1  protein ALWAYS EARLY 3 isoform X1

      UniProtKB/TrEMBL
      Q10G93

    4. XM_066308996.1 → XP_066165093.1  protein ALWAYS EARLY 3 isoform X6

      UniProtKB/TrEMBL
      Q10G92

    5. XM_066308991.1 → XP_066165088.1  protein ALWAYS EARLY 3 isoform X1

      UniProtKB/TrEMBL
      Q10G93

    6. XM_066308993.1 → XP_066165090.1  protein ALWAYS EARLY 3 isoform X2

      UniProtKB/TrEMBL
      Q10G92

    7. XM_066308995.1 → XP_066165092.1  protein ALWAYS EARLY 3 isoform X5

      UniProtKB/TrEMBL
      Q10G92

    8. XM_026023948.2 → XP_025879733.1  protein ALWAYS EARLY 3 isoform X6

      UniProtKB/TrEMBL
      Q10G92
      Conserved Domains (3) summary
      cd00167
      Location:47 → 89
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
      pfam06584
      Location:627 → 727
      DIRP
      cl25574
      Location:314 → 559
      TOP2c; TopoisomeraseII
    Nucleotide Protein
    Heading Accession and Version

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