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    LOC4346388 sodium/proton antiporter 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346388, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346388
    Gene description
    sodium/proton antiporter 1
    Locus tag
    OSNPB_090109800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 64.9), leaves after flowering (RPKM 39.4) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (4897835..4909260)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (878128..889628)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346387 Neighboring gene uncharacterized LOC136351840 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At4g37250 Neighboring gene uncharacterized LOC112936461

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsNHAD is a chloroplast membrane-located transporter required for resistance to salt stress in rice (Oryza sativa). Song Liu X, et al. Plant Sci, 2020 Feb. PMID 31928685
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in sodium ion transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium/proton antiporter 1
    Names
    Na(+)/H(+) antiporter NhaD
    Os09g0109800
    P0501E09.36-1
    P0501E09.36-2
    putative Na+/H+ antiporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      4897835..4909260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756906.3 → XP_015612392.1  sodium/proton antiporter 1

      UniProtKB/TrEMBL
      A0A0P0XJN2
      Conserved Domains (1) summary
      PLN00137
      Location:129 → 552
      PLN00137; NHAD transporter family protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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