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    LOC9268563 serine/threonine-protein phosphatase 7 long form homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9268563, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC9268563
    Gene description
    serine/threonine-protein phosphatase 7 long form homolog
    Locus tag
    OSNPB_090255300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 5.3), leaves before flowering (RPKM 4.1) and 5 other tissues See more
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    Genomic context

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    See LOC9268563 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (8538397..8541462)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (4190748..4194670)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene putative cysteine proteinase inhibitor 11 Neighboring gene uncharacterized LOC4346529 Neighboring gene uncharacterized LOC136351247 Neighboring gene beta-fructofuranosidase, insoluble isoenzyme 7-like Neighboring gene uncharacterized LOC136351748

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning and expression analysis of the cell-wall invertase gene family in rice (Oryza sativa L.). Cho JI, et al. Plant Cell Rep, 2005 Jun. PMID 15759120

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in meristem development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in meristem maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/threonine-protein phosphatase 7 long form homolog; uncharacterized protein LOC9268563
    Names
    Os09g0255300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      8538397..8541462
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757089.3 → XP_015612575.1  uncharacterized protein LOC9268563 isoform X1

      Conserved Domains (1) summary
      PTZ00341
      Location:126 → 222
      PTZ00341; Ring-infected erythrocyte surface antigen; Provisional

    2. XM_066304358.1 → XP_066160455.1  serine/threonine-protein phosphatase 7 long form homolog isoform X2

    Nucleotide Protein
    Heading Accession and Version

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