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    LOC4343339 pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343339, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343339
    Gene description
    pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
    Locus tag
    OSNPB_070508000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1163_G04.102
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    Genomic context

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    See LOC4343339 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (19517351..19525490, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (19290923..19299106, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene transcription factor GTE11 Neighboring gene transfer RNA histidin (anticodon GUG) Neighboring gene protein FLX-like 1 Neighboring gene SH3 domain-containing protein 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular anatomical structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
    Names
    Os07g0508000
    putative DEAH-box RNA helicase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      19517351..19525490 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791727.3 → XP_015647213.1  pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7

      UniProtKB/TrEMBL
      B8B6H1, Q0D667, Q7XIR8
      Conserved Domains (3) summary
      COG1643
      Location:566 → 1227
      HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
      PRK12678
      Location:35 → 258
      PRK12678; transcription termination factor Rho; Provisional
      pfam15927
      Location:1229 → 1260
      Casc1_N; Cancer susceptibility candidate 1 N-terminus
    Nucleotide Protein
    Heading Accession and Version

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