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    LOC4331673 cell number regulator 13 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331673, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4331673
    Gene description
    cell number regulator 13
    Locus tag
    OSNPB_030157300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsMCA1
    Expression
    Broad expression in flower buds (RPKM 18.0), milk grains (RPKM 14.2) and 5 other tissues See more
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    Genomic context

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    See LOC4331673 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3068949..3074047)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene heavy metal-associated isoprenylated plant protein 27 Neighboring gene uncharacterized LOC4331671 Neighboring gene ABC transporter G family member 22 Neighboring gene FH protein interacting protein FIP2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Plasma membrane protein OsMCA1 is involved in regulation of hypo-osmotic shock-induced Ca2+ influx and modulates generation of reactive oxygen species in cultured rice cells. Kurusu T, et al. BMC Plant Biol, 2012 Jan 23. PMID 22264357, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cell number regulator 13
    Names
    Os03g0157300
    mid1-complementing activity 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      3068949..3074047
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772480.2 → XP_015627966.1  cell number regulator 13

      UniProtKB/TrEMBL
      B8ANU0, Q0DV11, Q10RJ5
      Conserved Domains (2) summary
      pfam04749
      Location:298 → 395
      PLAC8; PLAC8 family
      cd21037
      Location:21 → 146
      MLKL_NTD; N-terminal domain of mixed lineage kinase domain-like protein (MLKL) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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