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    LOC4341998 protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341998, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341998
    Gene description
    protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic
    Locus tag
    OSNPB_060704700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0018H04.3
    Expression
    Ubiquitous expression in roots after flowering (RPKM 4.2), flowers (RPKM 3.6) and 6 other tissues See more
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    Genomic context

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    See LOC4341998 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (30631201..30635423, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29762519..29766793, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat extensin-like protein 2 Neighboring gene delta-aminolevulinic acid dehydratase, chloroplastic-like Neighboring gene probable histone acetyltransferase HAC-like 2 Neighboring gene probable histone acetyltransferase HAC-like 2 Neighboring gene putative tRNA (cytidine(32)/guanosine(34)-2'-O)-methyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A network of rice genes associated with stress response and seed development. Cooper B, et al. Proc Natl Acad Sci U S A, 2003 Apr 15. PMID 12684538, Free PMC Article
    2. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic
    Names
    Os06g0704700
    putative UOS1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      30631201..30635423 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787517.3 → XP_015643003.1  protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0X0S3, A2YGS4, Q5Z8V8
      Conserved Domains (2) summary
      cl21454
      Location:215 → 610
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
      cl21728
      Location:336 → 471
      CIA30; Complex I intermediate-associated protein 30 (CIA30)

    RNA

    1. XR_010742226.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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