LOC4344593 pentatricopeptide repeat-containing protein At1g53600, mitochondrial [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4344593
Gene description: pentatricopeptide repeat-containing protein At1g53600, mitochondrial
Locus tag: OSNPB_080131000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in flower buds (RPKM 1.5), flowers (RPKM 1.4) and 6 other tissues See more
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Genomic context

Location:: chromosome: 8

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	8	NC_029263.1 (1749844..1751934)

Chromosome 8 - NC_029263.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in RNA modification	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: pentatricopeptide repeat-containing protein At1g53600, mitochondrial

Names: OSJNBb0009H02.8; Os08g0131000; P0582D05.138; putative pentatricopeptide (PPR) repeat-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001422895.1 → NP_001409824.1 pentatricopeptide repeat-containing protein At1g53600, mitochondrial

Status: VALIDATED

Source sequence(s)

AK067165, AK100132, AK101091

UniProtKB/TrEMBL

Q0J875, Q7EZR5

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029263.1 Reference IRGSP-1.0 Primary Assembly

Range

1749844..1751934

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_026027577.1 → XP_025883362.1 pentatricopeptide repeat-containing protein At1g53600, mitochondrial

Conserved Domains (2) summary

sd00004
Location:516 → 541

PPR; PPR repeat [structural motif]

cl25449
Location:15 → 667

PPR_2; PPR repeat family