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    LOC4339038 probable DNA helicase MCM8 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339038, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4339038
    Gene description
    probable DNA helicase MCM8
    Locus tag
    OSNPB_050464100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    MCM8; OsMCM8; OsJ_18839; OJ1280_A04.12
    Expression
    Broad expression in flower buds (RPKM 1.4), flowers (RPKM 1.3) and 6 other tissues See more
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    Genomic context

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    See LOC4339038 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22902837..22912318)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22789259..22798747)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene nuclear transcription factor Y subunit B-3-like Neighboring gene E3 ubiquitin-protein ligase UPL4 Neighboring gene uncharacterized LOC4339039 Neighboring gene uncharacterized LOC136356551

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA duplex unwinding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MCM complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable DNA helicase MCM8
    Names
    LOC_Os05g38850
    Minichromosome maintenance 8
    NP_001407459.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420530.1 → NP_001407459.1  probable DNA helicase MCM8

      Status: VALIDATED

      Source sequence(s)
      AK108033, AP014961
      UniProtKB/Swiss-Prot
      B8AZ14, B9FKM7, Q60EQ1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22902837..22912318
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_010741211.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B9FKM7.1 GenPept UniProtKB/Swiss-Prot:B9FKM7

    Gene LinkOut

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    Research Materials