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    LOC9269248 flagellar radial spoke protein 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269248, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC9269248
    Gene description
    flagellar radial spoke protein 5
    Locus tag
    OSNPB_090567366
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1155_H10.28-1
    Expression
    Biased expression in leaves before flowering (RPKM 223.3), roots after flowering (RPKM 125.9) and 3 other tissues See more
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    Genomic context

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    See LOC9269248 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (27093838..27097304)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22649093..22652081)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112936462 Neighboring gene uncharacterized LOC4347883 Neighboring gene monodehydroascorbate reductase 3, cytosolic-like Neighboring gene histidine-containing phosphotransfer protein 2-like Neighboring gene putative fatty acyl-CoA reductase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    flagellar radial spoke protein 5
    Names
    Os09g0567366

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403937.1 → NP_001390866.1  flagellar radial spoke protein 5

      Status: VALIDATED

      Source sequence(s)
      CB642271, CB647170, CF298857, CI320456
      Conserved Domains (1) summary
      cd19101
      Location:52 → 359
      AKR_unchar; uncharacterized aldo-keto reductase (AKR) superfamily protein

    2. NM_001422382.1 → NP_001409311.1  flagellar radial spoke protein 5

      Status: VALIDATED

      Source sequence(s)
      AK068800
      UniProtKB/TrEMBL
      A0A0P0XRQ1, Q652L5

    RNA

    1. NR_186181.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK066166, CF298857

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      27093838..27097304
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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