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    LOC4341217 RING-H2 finger protein ATL39 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341217, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4341217
    Gene description
    RING-H2 finger protein ATL39
    Locus tag
    OSNPB_060537600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4341217 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (21000311..21001094)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (20143799..20144668)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene RING-H2 finger protein ATL39 Neighboring gene E3 ubiquitin-protein ligase EL5 Neighboring gene PLASMODESMATA CALLOSE-BINDING PROTEIN 5 Neighboring gene uncharacterized LOC112939279

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    RING-H2 finger protein ATL39
    Names
    Os06g0537600
    P0551A03.25

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      21000311..21001094
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015786121.2 → XP_015641607.1  RING-H2 finger protein ATL39

      UniProtKB/TrEMBL
      A0A0P0WXS6, A2YDS6, A3BCF9, Q5Z6U8
      Conserved Domains (1) summary
      cl17238
      Location:85 → 128
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
    Heading Accession and Version

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