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    LOC4335364 uncharacterized LOC4335364 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335364, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335364
    Gene description
    uncharacterized LOC4335364
    Locus tag
    OSNPB_040278900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 13.1), roots after flowering (RPKM 9.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (12036012..12049788, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (11801040..11814963, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278758 Neighboring gene BTB/POZ domain-containing protein At2g13690 Neighboring gene uncharacterized LOC9267104 Neighboring gene uncharacterized LOC107276637 Neighboring gene uncharacterized LOC107280569 Neighboring gene uncharacterized LOC9268155

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables flavin adenine dinucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA dihydrouridine synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA dihydrouridine synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4335364
    Names
    Os04g0278900
    tRNA-dihydrouridine(20/20a) synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      12036012..12049788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781267.3 → XP_015636753.1  uncharacterized protein LOC4335364 isoform X2

      UniProtKB/TrEMBL
      A2XRC7
      Conserved Domains (2) summary
      COG0042
      Location:57 → 393
      DusA; tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
      cl21457
      Location:65 → 395
      TIM_phosphate_binding; TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate ...

    2. XM_015781266.3 → XP_015636752.1  uncharacterized protein LOC4335364 isoform X1

      UniProtKB/TrEMBL
      A2XRC7
      Conserved Domains (1) summary
      cl21457
      Location:65 → 395
      TIM; TIM-like beta/alpha barrel domains

    3. XM_015781268.3 → XP_015636754.1  uncharacterized protein LOC4335364 isoform X3

      UniProtKB/TrEMBL
      A0A0P0W8E8, Q0JEG3
      Conserved Domains (1) summary
      cl21457
      Location:3 → 289
      TIM; TIM-like beta/alpha barrel domains
    Nucleotide Protein
    Heading Accession and Version

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