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    LOC4344544 MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344544, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344544
    Gene description
    MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1
    Locus tag
    OSNPB_080120500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    B1203H11.9
    Expression
    Ubiquitous expression in flower buds (RPKM 45.5), roots after flowering (RPKM 45.4) and 6 other tissues See more
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    Genomic context

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    See LOC4344544 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (1132994..1137667, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1121757..1126450, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene protein STICHEL-like 2 Neighboring gene uncharacterized LOC136351349 Neighboring gene fructose-bisphosphate aldolase 6, cytosolic Neighboring gene UPF0481 protein At3g47200

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in negative regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1
    Names
    Os08g0120500
    putative MA3 domain-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      1132994..1137667 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794215.3 → XP_015649701.1  MA3 DOMAIN-CONTAINING TRANSLATION REGULATORY FACTOR 1

      UniProtKB/TrEMBL
      A0A0P0XB48, A2YQR1, A3BP51, Q0J8C2, Q6YPF2
      Conserved Domains (2) summary
      smart00544
      Location:137 → 248
      MA3; Domain in DAP-5, eIF4G, MA-3 and other proteins
      pfam02847
      Location:599 → 706
      MA3; MA3 domain
    Nucleotide Protein
    Heading Accession and Version

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