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    LOC4325964 aspartyl protease family protein 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325964, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325964
    Gene description
    aspartyl protease family protein 2
    Locus tag
    OSNPB_010598600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 21.3), milk grains (RPKM 12.4) and 4 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (24089599..24091356)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (23514936..23516777)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351868 Neighboring gene F-box/FBD/LRR-repeat protein At1g13570 Neighboring gene cytoplasmic tRNA 2-thiolation protein 1-like Neighboring gene uncharacterized LOC107277984

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables aspartic-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    aspartyl protease family protein 2
    Names
    Os01g0598600
    P0025A05.25
    nucleoid DNA-binding protein cnd41-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      24089599..24091356
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788938.3 → XP_015644424.1  aspartyl protease family protein 2

      UniProtKB/TrEMBL
      A0A0P0V4U6, A2WS70, Q0JLH9, Q94D20
      Conserved Domains (1) summary
      cd05472
      Location:146 → 500
      cnd41_like; Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase
    Nucleotide Protein
    Heading Accession and Version

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