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    LOC4345945 peroxisome biogenesis protein 5 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345945, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345945
    Gene description
    peroxisome biogenesis protein 5
    Locus tag
    OSNPB_080500100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PEX5; OJ1118_A06.13-1; OJ1118_A06.13-2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 43.9), leaves before flowering (RPKM 39.1) and 6 other tissues See more
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    Genomic context

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    See LOC4345945 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (24830738..24839978)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24685251..24694486)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene F-box protein At-B Neighboring gene COP9 signalosome complex subunit 6-like Neighboring gene pre-mRNA-splicing factor CWC25 homolog Neighboring gene probable protein phosphatase 2C 66

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Cloning of two splice variants of the rice PTS1 receptor, OsPex5pL and OsPex5pS, and their functional characterization using pex5-deficient yeast and Arabidopsis. Lee JR, et al. Plant J, 2006 Aug. PMID 16792693
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peroxisome matrix targeting signal-1 binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein import into peroxisome matrix, docking IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peroxisome biogenesis protein 5
    Names
    Os08g0500100
    peroxisomal targeting signal 1 receptor long form
    putative peroxisomal targeting signal 1 receptor

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      24830738..24839978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794953.3 → XP_015650439.1  peroxisome biogenesis protein 5 isoform X1

      UniProtKB/TrEMBL
      B8BC53, B9G1N0, Q32Y71
      Conserved Domains (3) summary
      sd00006
      Location:612 → 640
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:612 → 645
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:648 → 711
      TPR_11; TPR repeat

    2. XM_015794954.3 → XP_015650440.1  peroxisome biogenesis protein 5 isoform X2

      UniProtKB/TrEMBL
      Q0J4P8, Q32Y71, Q6ZKM0
      Conserved Domains (2) summary
      TIGR02917
      Location:472 → 698
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:598 → 626
      TPR; TPR repeat [structural motif]

    3. XM_015794955.2 → XP_015650441.1  peroxisome biogenesis protein 5 isoform X3

      UniProtKB/TrEMBL
      A0A0P0XHE9, Q32Y70, Q6ZKM1
      Conserved Domains (2) summary
      TIGR02917
      Location:415 → 641
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:541 → 569
      TPR; TPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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