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    LOC4351839 bZIP transcription factor 1-D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351839, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351839
    Gene description
    bZIP transcription factor 1-D
    Locus tag
    OSNPB_120233800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    osZIP-1a
    Expression
    Ubiquitous expression in roots after flowering (RPKM 27.2), leaves after flowering (RPKM 20.5) and 6 other tissues See more
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    Genomic context

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    See LOC4351839 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (7369322..7377690, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (7330724..7338153, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene MAG2-interacting protein 2 Neighboring gene uncharacterized LOC136354705 Neighboring gene FAS1 domain-containing protein SELMODRAFT_448915 Neighboring gene uncharacterized LOC4351841 Neighboring gene uncharacterized LOC107278113

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of three rice basic/leucine zipper factors, including two inhibitors of EmBP-1 DNA binding activity. Nantel A, et al. J Biol Chem, 1996 Dec 6. PMID 8940135
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    bZIP transcription factor 1-D
    Names
    DNA-binding factor of bZIP class
    Os12g0233800
    bZIP transcription factor 68

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      7369322..7377690 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764232.3 → XP_015619718.1  bZIP transcription factor 1-D isoform X2

      UniProtKB/TrEMBL
      A0A9K3Y7H0, A2ZJ90, A3CG45, Q0IP92, Q2QVD7, Q40625
      Conserved Domains (3) summary
      smart00338
      Location:293 → 357
      BRLZ; basic region leucin zipper
      pfam07777
      Location:1 → 98
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:142 → 267
      MFMR_assoc; Disordered region downstream of MFMR

    2. XM_015764231.3 → XP_015619717.1  bZIP transcription factor 1-D isoform X1

      UniProtKB/TrEMBL
      A2ZJ90
      Conserved Domains (4) summary
      smart00338
      Location:294 → 358
      BRLZ; basic region leucin zipper
      cd14702
      Location:299 → 350
      bZIP_plant_GBF1; coiled coil [structural motif]
      pfam07777
      Location:1 → 99
      MFMR; G-box binding protein MFMR
      pfam16596
      Location:137 → 268
      MFMR_assoc; Disordered region downstream of MFMR

    RNA

    1. XR_010738288.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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