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    LOC4337361 protein DJ-1 homolog D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337361, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337361
    Gene description
    protein DJ-1 homolog D
    Locus tag
    OSNPB_040671700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 85.6), flowers (RPKM 51.3) and 6 other tissues See more
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    Genomic context

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    See LOC4337361 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34787819..34790734, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34267858..34270894, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene probable polyamine oxidase 2 Neighboring gene polyamine oxidase 5-like Neighboring gene zinc finger CCCH domain-containing protein 32-like Neighboring gene uncharacterized LOC136356087 Neighboring gene auxin response factor 12-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    protein DJ-1 homolog D
    Names
    Os04g0671700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34787819..34790734 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777956.3 → XP_015633442.1  protein DJ-1 homolog D

      UniProtKB/TrEMBL
      A0A5S6R9P7, A0A8J8YLY7, A2XYU1, A3AYI1, Q0J953, Q258Y7, Q7XPI5
      Conserved Domains (1) summary
      cd03169
      Location:198 → 381
      GATase1_PfpI_1; Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus
    Nucleotide Protein
    Heading Accession and Version

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