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    LOC4328191 uncharacterized LOC4328191 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328191, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328191
    Gene description
    uncharacterized LOC4328191
    Locus tag
    OSNPB_020130600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1007_D04.9
    Expression
    Biased expression in flowers (RPKM 16.8), milk grains (RPKM 10.2) and 3 other tissues See more
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    Genomic context

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    See LOC4328191 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1601653..1606316)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1594529..1599313)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable polygalacturonase At1g80170 Neighboring gene BOI-related E3 ubiquitin-protein ligase 1 Neighboring gene uncharacterized LOC9271108 Neighboring gene uncharacterized LOC136355137

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328191
    Names
    Os02g0130600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      1601653..1606316
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768327.3 → XP_015623813.1  uncharacterized protein LOC4328191

      UniProtKB/TrEMBL
      A0A0N7KEM2, B8AH13, Q0E489, Q6ZG95
    Nucleotide Protein
    Heading Accession and Version

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