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    LOC9270388 uncharacterized LOC9270388 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270388, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9270388
    Gene description
    uncharacterized LOC9270388
    Locus tag
    OSNPB_080101400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 16.1), leaves after flowering (RPKM 15.6) and 6 other tissues See more
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    Genomic context

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    See LOC9270388 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (82899..88971)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (78203..84416)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene B3 domain-containing protein IDEF1-like Neighboring gene high mobility group B protein 7 Neighboring gene molybdate transporter 1 Neighboring gene flap endonuclease GEN-like 2 Neighboring gene ascorbate-specific transmembrane electron transporter 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein localization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC9270388
    Names
    B1147B12.15
    Os08g0101400
    protein odr-4 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      82899..88971
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792585.3 → XP_015648071.1  uncharacterized protein LOC9270388

      UniProtKB/TrEMBL
      A0A0N7KP46, A0A8J8XTZ1, A2Z5M7, B9FYM4
      Conserved Domains (1) summary
      pfam14778
      Location:29 → 386
      ODR4-like; Olfactory receptor 4-like

    RNA

    1. XR_010734294.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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