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    LOC4339963 oligopeptide transporter 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339963, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4339963
    Gene description
    oligopeptide transporter 7
    Locus tag
    OSNPB_060125500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    GT1
    Expression
    Broad expression in leaves before flowering (RPKM 50.1), roots after flowering (RPKM 21.6) and 4 other tissues See more
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    Genomic context

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    See LOC4339963 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (1528752..1532382, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (1371843..1375537, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene FCS-Like Zinc finger 15 Neighboring gene pentatricopeptide repeat-containing protein At5g16420, mitochondrial Neighboring gene oligopeptide transporter 7 Neighboring gene uncharacterized LOC112939269 Neighboring gene pentatricopeptide repeat-containing protein At5g08510 Neighboring gene uncharacterized LOC136356945 Neighboring gene E3 ubiquitin-protein ligase BIG BROTHER

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A novel family of transporters mediating the transport of glutathione derivatives in plants. Zhang MY, et al. Plant Physiol, 2004 Jan. PMID 14730075, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oligopeptide transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    oligopeptide transporter 7
    Names
    Os06g0125500
    P0425F02.29-1
    glutathione transporter
    sexual differentiation process protein isp4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      1528752..1532382 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788027.3 → XP_015643513.1  oligopeptide transporter 7 isoform X1

      UniProtKB/TrEMBL
      A0A8J8YP24, A2Y8R7, A3B7X8, B8B1X6, B9FR96, Q0DF08, Q7FU78
      Conserved Domains (1) summary
      TIGR00728
      Location:58 → 731
      OPT_sfam; oligopeptide transporter, OPT superfamily

    2. XM_015788028.3 → XP_015643514.1  oligopeptide transporter 7 isoform X2

      UniProtKB/TrEMBL
      B8B1X6, B9FR96
      Conserved Domains (1) summary
      TIGR00728
      Location:58 → 728
      OPT_sfam; oligopeptide transporter, OPT superfamily
    Nucleotide Protein
    Heading Accession and Version

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