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    LOC4349605 non-specific lipid-transfer protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4349605, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4349605
    Gene description
    non-specific lipid-transfer protein 1
    Locus tag
    OSNPB_110116000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in leaves after flowering (RPKM 408.8), roots after flowering (RPKM 330.1) and 3 other tissues See more
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    Genomic context

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    See LOC4349605 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (757615..758434)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (715399..716322)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene non-specific lipid-transfer protein 1 Neighboring gene uncharacterized LOC9270252 Neighboring gene non-specific lipid-transfer protein 1 Neighboring gene RING-H2 finger protein ATL74-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-specific lipid-transfer protein 1
    Names
    Os11g0116000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      757615..758434
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761855.2 → XP_015617341.1  non-specific lipid-transfer protein 1

      UniProtKB/TrEMBL
      A0A8J8YKN1, A2ZAT2, A3C7Z6, Q0IV35, Q2RBD1
      Conserved Domains (1) summary
      cd01960
      Location:28 → 115
      nsLTP1; Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, ...
    Nucleotide Protein
    Heading Accession and Version

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