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    LOC4343027 fatty acid desaturase DES2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343027, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343027
    Gene description
    fatty acid desaturase DES2
    Locus tag
    OSNPB_070417200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4343027 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (13378474..13379812)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (13219685..13224916)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene fatty acid desaturase DES2 Neighboring gene uncharacterized LOC112939734 Neighboring gene zinc finger protein STAMENLESS 1-like Neighboring gene thaumatin-like protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    fatty acid desaturase DES2
    Names
    OSJNBa0066B06.119
    Os07g0417200
    putative delta 12 oleic acid desaturase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      13378474..13379812
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790042.3 → XP_015645528.2  fatty acid desaturase DES2

    Nucleotide Protein
    Heading Accession and Version

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