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    LOC4328633 subtilisin-like protease SBT5.3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328633, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328633
    Gene description
    subtilisin-like protease SBT5.3
    Locus tag
    OSNPB_020198700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 8.7), leaves after flowering (RPKM 3.8) and 3 other tissues See more
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    Genomic context

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    See LOC4328633 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5540541..5547554, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5529954..5536954, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328631 Neighboring gene protein DNA-DAMAGE INDUCIBLE 1 Neighboring gene uncharacterized LOC4328634 Neighboring gene uncharacterized LOC4328635

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    subtilisin-like protease SBT5.3
    Names
    Os02g0198700
    P0026H03.20-1
    P0026H03.20-2
    putative subtilisin-like proteinase AIR3
    subtilisin-like serine protease AIR3-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5540541..5547554 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015767785.3 → XP_015623271.1  subtilisin-like protease SBT5.3

      UniProtKB/TrEMBL
      A0A0P0VGA9, A2X230, Q6H733
      Conserved Domains (4) summary
      cd04852
      Location:130 → 613
      Peptidases_S8_3; Peptidase S8 family domain, uncharacterized subfamily 3
      cd02120
      Location:378 → 508
      PA_subtilisin_like; Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, ...
      pfam05922
      Location:39 → 133
      Inhibitor_I9; Peptidase inhibitor I9
      pfam17766
      Location:696 → 791
      fn3_6; Fibronectin type-III domain
    Nucleotide Protein
    Heading Accession and Version

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