LOC4341462 heme oxygenase 1, chloroplastic-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4341462
Gene description: heme oxygenase 1, chloroplastic-like
Locus tag: OSNPB_060603000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: HO1; HY1; SE5; OsJ_21897
Expression: Ubiquitous expression in flower buds (RPKM 61.9), roots after flowering (RPKM 53.6) and 6 other tissues See more
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Genomic context

Location:: chromosome: 6

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	6	NC_089040.1 (24705512..24709859, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	6	NC_029261.1 (23853711..23858056, complement)

Chromosome 6 - NC_089040.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

PE-1 functions as a master regulator to mediate in chlorophyll biosynthesis and photosynthetic pathways.
Title: PE-1, Encoding Heme Oxygenase 1, Impacts Heading Date and Chloroplast Development in Rice ( Oryza sativa L.).
the activity of l-DES, as well as the enzymes involved in nitrogen metabolism, was significantly increased in the OsSE5-overexpression line.
Title: l-cysteine desulfhydrase-related H(2) S production is involved in OsSE5-promoted ammonium tolerance in roots of Oryza sativa.
Results suggest that SE5 (GenBank accession no. EU781632) may be useful for molecular breeding designed to improve plant tolerance to oxidative stress.
Title: RNAi knockdown of rice SE5 gene is sensitive to the herbicide methyl viologen by the down-regulation of antioxidant defense.

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables heme oxygenase (decyclizing) activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in heme oxidation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in phytochromobilin biosynthetic process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: heme oxygenase 1, chloroplastic

Names: LOC_Os06g40080; P0486H12.31; Protein PHOTOPERIODIC SENSITIVITY 5; putative heme oxygenase 1

NP_001389795.1

EC 1.14.14.18

XP_015643882.1

EC 1.14.14.18

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001402866.1 → NP_001389795.1 heme oxygenase 1, chloroplastic

Status: VALIDATED

Source sequence(s)

CB684919, CF326059, CI228076, CI573392

UniProtKB/Swiss-Prot

A0A0P0WYR3, Q69XJ4

UniProtKB/TrEMBL

B8B4C9

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089040.1 Reference ASM3414082v1 Primary Assembly

Range

24705512..24709859 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015788396.2 → XP_015643882.1 heme oxygenase 1, chloroplastic isoform X1

UniProtKB/TrEMBL

B8B4C9

Conserved Domains (1) summary

cd00232
Location:83 → 257

HemeO; Heme oxygenase catalyzes the rate limiting step in the degradation of heme to bilirubin, it is essential for recycling of iron from heme. Heme is used as a substrate and cofactor for its own degradation to biliverdin, iron, and carbon monoxide. This ...