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    LOC4341514 exopolygalacturonase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341514, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4341514
    Gene description
    exopolygalacturonase
    Locus tag
    OSNPB_060611400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0429G06.2
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    Genomic context

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    See LOC4341514 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25241851..25244192)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24379827..24382188)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene protein IQ-DOMAIN 33 Neighboring gene uncharacterized LOC112939329 Neighboring gene pentatricopeptide repeat-containing protein At1g03540 Neighboring gene uncharacterized LOC107281333 Neighboring gene exopolygalacturonase Neighboring gene cytidine deaminase 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polygalacturonase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    exopolygalacturonase
    Names
    Os06g0611400
    P0490F09.38
    putative polygalacturonase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      25241851..25244192
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787343.3 → XP_015642829.1  exopolygalacturonase

      UniProtKB/TrEMBL
      A0A0P0WYX7, A2YEY6, Q69X45
      Conserved Domains (1) summary
      cl19188
      Location:29 → 418
      PL-6; Polysaccharide Lyase Family 6
    Nucleotide Protein
    Heading Accession and Version

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