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    LOC4337315 indole-3-acetate O-methyltransferase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337315, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4337315
    Gene description
    indole-3-acetate O-methyltransferase 1-like
    Locus tag
    OSNPB_040665200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    IAMT1; SABATH4; OsSABATH4
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC4337315 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34470028..34475591, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33950197..33955829, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene beta-fructofuranosidase, insoluble isoenzyme 5-like Neighboring gene uncharacterized LOC4337314 Neighboring gene uncharacterized LOC136356247 Neighboring gene U5 spliceosomal RNA Neighboring gene U5 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Structural, biochemical, and phylogenetic analyses suggest that indole-3-acetic acid methyltransferase is an evolutionarily ancient member of the SABATH family. Zhao N, et al. Plant Physiol, 2008 Feb. PMID 18162595, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-adenosylmethionine-dependent methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    indole-3-acetate O-methyltransferase 1
    Names
    IAA carboxylmethyltransferase 1
    LOC_Os04g56950
    OSJNBa0087O24.5
    S-adenosyl-L-methionine:(indol-3-yl) acetate carboxylmethyltransferase 1
    indole-3-acetic acid methyltransferase
    NP_001406848.1
    NP_001406849.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419919.1 → NP_001406848.1  indole-3-acetate O-methyltransferase 1

      Status: VALIDATED

      Source sequence(s)
      AK110936
      UniProtKB/Swiss-Prot
      A0A0P0WGA0, Q0J998, Q7XPK4
      UniProtKB/TrEMBL
      A2XYN5, Q01MN8

    2. NM_001419920.1 → NP_001406849.1  indole-3-acetate O-methyltransferase 1

      Status: VALIDATED

      Source sequence(s)
      AK110936, AP014960
      UniProtKB/Swiss-Prot
      A0A0P0WGA0, Q0J998, Q7XPK4
      UniProtKB/TrEMBL
      A2XYN5, Q01MN8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34470028..34475591 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0J998.1 GenPept UniProtKB/Swiss-Prot:Q0J998

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials