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    LOC4324554 cationic peroxidase SPC4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324554, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4324554
    Gene description
    cationic peroxidase SPC4
    Locus tag
    OSNPB_010962700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    prx20
    Expression
    Broad expression in leaves after flowering (RPKM 78.1), roots after flowering (RPKM 53.7) and 5 other tissues See more
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    Genomic context

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    See LOC4324554 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (43081535..43084716)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42429478..42432550)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative box C/D snoRNA protein SPCC613.07 Neighboring gene small ribosomal subunit protein eS10z-like Neighboring gene cationic peroxidase SPC4 Neighboring gene cationic peroxidase SPC4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in hydrogen peroxide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in response to oxidative stress IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cationic peroxidase SPC4
    Names
    Os01g0962700
    P0483G10.28
    class III peroxidase 20
    putative peroxidase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      43081535..43084716
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766597.3 → XP_015622083.1  cationic peroxidase SPC4

      UniProtKB/TrEMBL
      A0A0P0VD60, A0A8J8YGM8, A0A9K3Y8E5, A2WZD6, A3A1S8, Q0JFT3, Q5JMS4, Q5U1S3
      Conserved Domains (1) summary
      cd00693
      Location:52 → 347
      secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
    Nucleotide Protein
    Heading Accession and Version

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