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    LOC4350030 extra-large guanine nucleotide-binding protein 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4350030, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4350030
    Gene description
    extra-large guanine nucleotide-binding protein 3
    Locus tag
    OSNPB_110206700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 22.2), leaves after flowering (RPKM 20.6) and 6 other tissues See more
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    Genomic context

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    See LOC4350030 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (5434286..5439475, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (5378564..5383909, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene transcription termination factor MTERF15, mitochondrial Neighboring gene uncharacterized LOC4350029 Neighboring gene transcriptional corepressor SEUSS Neighboring gene transcriptional corepressor SEUSS

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables G-protein beta/gamma-subunit complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables guanyl nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    extra-large guanine nucleotide-binding protein 3
    Names
    Os11g0206700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      5434286..5439475 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761980.3 → XP_015617466.1  extra-large guanine nucleotide-binding protein 3

      UniProtKB/TrEMBL
      A0A5S6RB15, A0A8J8YS61, A2ZCG1, A3C9J8, Q0ITZ1, Q2R941
      Conserved Domains (1) summary
      cd00066
      Location:443 → 826
      G-alpha; Alpha subunit of G proteins (guanine nucleotide binding)
    Nucleotide Protein
    Heading Accession and Version

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