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    LOC4328667 uncharacterized LOC4328667 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328667, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4328667
    Gene description
    uncharacterized LOC4328667
    Locus tag
    OSNPB_020204000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 3.8), roots before flowering (RPKM 3.4) and 6 other tissues See more
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    Genomic context

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    See LOC4328667 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5822788..5824189, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5812037..5813585, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355115 Neighboring gene uncharacterized LOC4328666 Neighboring gene uncharacterized LOC9266610 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP95

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328667
    Names
    Os02g0204000
    P0544H11.15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      5822788..5824189 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768638.3 → XP_015624124.1  uncharacterized protein LOC4328667

      UniProtKB/TrEMBL
      B8ADU6, Q0E2Y3, Q6Z6E3
      Conserved Domains (3) summary
      sd00006
      Location:186 → 216
      TPR; TPR repeat [structural motif]
      pfam00515
      Location:187 → 219
      TPR_1; Tetratricopeptide repeat
      pfam13414
      Location:170 → 218
      TPR_11; TPR repeat

    2. XM_066308017.1 → XP_066164114.1  uncharacterized protein LOC4328667

      UniProtKB/TrEMBL
      Q0E2Y3, Q6Z6E3
    Nucleotide Protein
    Heading Accession and Version

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