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    LOC4325026 E3 ubiquitin-protein ligase AIRP2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325026, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325026
    Gene description
    E3 ubiquitin-protein ligase AIRP2
    Locus tag
    OSNPB_010905700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 44.9), flower buds (RPKM 38.7) and 6 other tissues See more
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    Genomic context

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    See LOC4325026 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40063411..40066760)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39428991..39432425)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene B3 domain-containing protein Os01g0905400-like Neighboring gene formin-like protein 16 Neighboring gene fructose-bisphosphate aldolase 3, cytoplasmic-like Neighboring gene uncharacterized LOC4324974

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsMTD2-mediated reactive oxygen species (ROS) balance is essential for intact pollen-tube elongation in rice. Kim YJ, et al. Plant J, 2021 Aug. PMID 34143922
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. OsMTD2-mediated reactive oxygen species (ROS) balance is essential for intact pollen-tube elongation in rice.
      Title: OsMTD2-mediated reactive oxygen species (ROS) balance is essential for intact pollen-tube elongation in rice.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase AIRP2
    Names
    OSJNOa108M02.10
    Os01g0905700
    putative MTD2
    putative zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001406186.1 → NP_001393115.1  E3 ubiquitin-protein ligase AIRP2

      Status: VALIDATED

      Source sequence(s)
      AK104453
      UniProtKB/TrEMBL
      B8A7T2, B9EVG0, Q5N6U7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40063411..40066760
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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