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    LOC4335042 pullulanase 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335042, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335042
    Gene description
    pullulanase 1, chloroplastic
    Locus tag
    OSNPB_040164900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    PUL
    Expression
    Restricted expression toward milk grains (RPKM 490.5) See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (4497968..4511114)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (4405753..4418895)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268906 Neighboring gene uncharacterized LOC9270612 Neighboring gene thaumatin-like protein 1b Neighboring gene protein SENSITIVE TO PROTON RHIZOTOXICITY 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pullulanase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pullulanase 1, chloroplastic
    Names
    Os04g0164900
    starch debranching enzyme

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      4497968..4511114
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781466.3 → XP_015636952.1  pullulanase 1, chloroplastic

      UniProtKB/TrEMBL
      I7HIL3
      Conserved Domains (1) summary
      PLN02877
      Location:16 → 960
      PLN02877; alpha-amylase/limit dextrinase
    Nucleotide Protein
    Heading Accession and Version

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