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    LOC4351457 BTB/POZ domain and ankyrin repeat-containing protein NH5.2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351457, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4351457
    Gene description
    BTB/POZ domain and ankyrin repeat-containing protein NH5.2-like
    Locus tag
    OSNPB_120138500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NH5; NH5.2
    Expression
    Biased expression in flowers (RPKM 15.4), flower buds (RPKM 11.2) and 1 other tissue See more
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    Genomic context

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    See LOC4351457 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1895021..1898047)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1869398..1872461)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene scarecrow-like protein 3 Neighboring gene scarecrow-like protein 3 Neighboring gene protein STRICTOSIDINE SYNTHASE-LIKE 10 Neighboring gene 2-isopropylmalate synthase A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription cis-regulatory region binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in induced systemic resistance, jasmonic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plant organ development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain and ankyrin repeat-containing protein NH5.2
    Names
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Ankyrin repeat region BTBA6
    LOC_Os12g04410
    regulatory protein NPR6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423314.1 → NP_001410243.1  BTB/POZ domain and ankyrin repeat-containing protein NH5.2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AK060933, AP014968
      UniProtKB/Swiss-Prot
      A0A0P0Y6T3, Q0IQ83, Q2QXZ2

    2. NM_001423315.1 → NP_001410244.1  BTB/POZ domain and ankyrin repeat-containing protein NH5.2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AK060933

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      1895021..1898047
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066305973.1 → XP_066162070.1  BTB/POZ domain and ankyrin repeat-containing protein NH5.2 isoform X1

    2. XM_066305972.1 → XP_066162069.1  BTB/POZ domain and ankyrin repeat-containing protein NH5.2 isoform X1

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q2QXZ2.1 GenPept UniProtKB/Swiss-Prot:Q2QXZ2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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